Unique ID issued by UMIN | UMIN000056067 |
---|---|
Receipt number | R000064060 |
Scientific Title | Significance of molecular epidemiological surveillance for non-tuberculous mycobacterial pulmonary disease: a single center prospective cohort study |
Date of disclosure of the study information | 2024/11/06 |
Last modified on | 2024/11/06 09:46:29 |
Significance of molecular epidemiological surveillance for non-tuberculous mycobacterial pulmonary disease: a single center prospective cohort study
Molecular Surveillance of NTM Lung Disease: Single-Center Cohort Study
Significance of molecular epidemiological surveillance for non-tuberculous mycobacterial pulmonary disease: a single center prospective cohort study
Molecular Surveillance of NTM Lung Disease: Single-Center Cohort Study
Japan |
Nontuberclousis mycobacteria
Pneumology | Infectious disease |
Others
YES
1. To comprehensively investigate strain replacements and their impact in nontuberculous mycobacteria (NTM) over a defined period.
2. To evaluate the effectiveness of NGS-based digital VNTR.
Efficacy
1. Frequency of species and strain changes over approximately 1.5 years
2. Concordance rate between digital VNTR and conventional VNTR
Observational
18 | years-old | <= |
Not applicable |
Male and Female
Patients diagnosed with or suspected of NTM-PD, based on international guidelines, who provided written informed consent.
None
100
1st name | Hiroshi |
Middle name | |
Last name | Kida |
Osaka Toneyama Medical Center
Respiratory medicine
560-8552
5-1-1 Toneyama, Toyonaka, Osaka, Japan
06-6853-2001
kida.hiroshi.sv@mail.hosp.go.jp
1st name | Kazuki |
Middle name | |
Last name | Hashimoto |
Osaka Toneyama Medical Center
Respiratory medicine
560-8552
5-1-1 Toneyama, Toyonaka, Osaka, Japan
06-6853-2001
k.hashimoto@imed3.med.osaka-u.ac.jp
Osaka Toneyama Medical Center
Osaka Toneyama Medical Center
Other
Osaka Toneyama Medical Center
5-1-1 Toneyama, Toyonaka, Osaka, Japan
06-6853-2001
k.hashimoto@imed3.med.osaka-u.ac.jp
NO
2024 | Year | 11 | Month | 06 | Day |
None
Unpublished
In preparation for publishing
112
Of the 112 cases analyzed, 13 (11.6%) showed changes in the species of bacteria, 15 (13.4%) showed changes in the VNTR type, but not in the species of bacteria, and 84 (75.0%) showed no changes in either the species of bacteria or the VNTR type. The results of dVNTR typing were consistent with those of conventional VNTR typing, and it was possible to easily perform typing at the strain level.
2024 | Year | 11 | Month | 06 | Day |
A total of 232 patients were participated in this prospective study, of which 166 had positive sputum cultures in the enrollment period (From 1 March 2021, to 31 March 2022). Follow-up positive cultures at least more than eight months apart were obtained in 112 patients (from enrollment to December 2023). The median interval was 1.5 years (IQR 1.1-1.9). Analysis was also performed on isolates from 4 cases in which culture specimens showed different colony growth and characteristics. The median age of the cohort was 72 years (IQR 67-80), with 81 women (71.9%), and the median BMI was 19.1 (IQR 16.4-22.5). Radiological findings revealed the nodular bronchiectatic form without cavitation in 59 patients (52.2%).
We have established the prospective cohort of NTM. We enrolled patients who had been diagnosed with or suspected of NTM-PD, in accordance with international guideline.
None
We performed a time-course analysis of species, subspecies, strains and drug susceptibilities using core genome multi locus sequencing typing (cgMLST) based on whole genome sequencing and variable numbers of tandem repeats (VNTR) typing, and drug susceptibility testing at approximately 1.5-year intervals. In addition, we developed a simple long-read sequencing-based digital VNTR (dVNTR) typing and evaluated its efficacy.
Completed
2021 | Year | 01 | Month | 01 | Day |
2024 | Year | 11 | Month | 05 | Day |
2021 | Year | 05 | Month | 01 | Day |
2022 | Year | 03 | Month | 31 | Day |
Observation only
2024 | Year | 11 | Month | 06 | Day |
2024 | Year | 11 | Month | 06 | Day |
Value
https://center6.umin.ac.jp/cgi-open-bin/ctr_e/ctr_view.cgi?recptno=R000064060